NGS in Chinese Children With Short Stature

Xin Li, Ruen Yao, Guoying Chang, Qun Li, Cui Song, Niu Li, Yu Ding, Juan Li, Yao Chen, Yirou Wang, Xiaodong Huang, Yongnian Shen, Hao Zhang, Jian Wang, Xiumin Wang
The Journal of Clinical Endocrinology & Metabolism, Volume 107, Issue 4, April 2022, Pages 972–985
https://doi.org/10.1210/clinem/dgab863

Abstract

Context

Data and studies based on exome sequencing for the genetic evaluation of short stature are limited, and more large-scale studies are warranted. Some factors increase the likelihood of a monogenic cause of short stature, including skeletal dysplasia, severe short stature, and small for gestational age (SGA) without catch-up growth. However, whether these factors can serve as predictors of molecular diagnosis remains unknown.

Objective

We aimed to explore the diagnostic efficiency of the associated risk factors and their exome sequences for screening.

Methods

We defined and applied factors that increased the likelihood of monogenic causes of short stature in diagnostic genetic tests based on next-generation sequencing (NGS) in 814 patients with short stature and at least 1 other factor.

Results

Pathogenic/likely pathogenic (P/LP) variants in genes, copy number variations, and chromosomal abnormalities were identified in 361 patients. We found P/LP variants among 111 genes, and RASopathies comprised the most important etiology. Short stature combined with other phenotypes significantly increased the likelihood of a monogenic cause, including skeletal dysplasia, facial dysmorphism, and intellectual disability, compared with simple severe short stature (<−3 SD scores). We report novel candidate pathogenic genes, KMT2C for unequivocal growth hormone insensitivity and GATA6 for SGA.

Conclusion

Our study identified the diagnostic characteristics of NGS in short stature with different risk factors. Our study provides novel insights into the current understanding of the etiology of short stature in patients with different phenotypes.

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